| 815 | Hi, How Are You (1983) |
| 751 | 1990 (1990) |
| 692 | Yip Jump Music (1983) |
| 649 | Songs of Pain (1980) |
| 620 | Don't Be Scared (1982) |
| 572 | Artistic Vice (1991) |
| 569 | Retired Boxer (1984) |
| 552 | Merry Christmas (1988) |
| 548 | Frankenstein Love (1998) |
| 546 | More Songs of Pain (1982) |
| 541 | The What of Whom (1982) |
| 534 | Continued Story (1985) |
| 524 | Respect (1985) |
| 456 | Live at SXSW (1990) |
| 265 | Alive in New York City |
| 137 | The Late Great Daniel Johnston: Discovered Covered (2004) |
| 125 | Welcome To My World (2006) |
| 119 | Lost Recordings III (1980) |
| 113 | Lost Recordings IV (1980-1983) |
| 111 | Lost Recordings II (1983) |
| 110 | Rejected Unknown (2001) |
| 107 | The Lost Recordings (1983) |
| 103 | Fear Yourself (2003) |
| 101 | White Magic (2004) |
| 101 | Why Me? (2000) |
| 98 | Lost Recordings V (1980-1983) |
| 96 | Is And Always Was (2009) |
| 94 | Beam Me Up! (2010) |
| 90 | Space Ducks: Soundtrack (2012) |
| 87 | Lost and Found (2006) |